Time is money. They probably think that they can do a better job, faster, and cheaper by shooting the whole side than by fixing each scratch individually. If money is no object, I would think that they would be happy to do whatever you want.
The body shop wants to shoot the whole side.. Is there anything I can say to get them to do just what I want.. These are small paint blisters not holes but there are several on the side. Luckily most are in the non metallic area. Until I find someone what should I do so I dont get holes there? Whats the best primer to use that stops rust?